Package: coglasso 1.0.2.9000
coglasso: Collaborative Graphical Lasso - Multi-Omics Network Reconstruction
Reconstruct networks from multi-omics data sets with the collaborative graphical lasso (coglasso) algorithm described in Albanese, A., Kohlen, W., and Behrouzi, P. (2024) <arxiv:2403.18602>. Build multiple networks using the coglasso() function, select the best one with stars_coglasso().
Authors:
coglasso_1.0.2.9000.tar.gz
coglasso_1.0.2.9000.zip(r-4.5)coglasso_1.0.2.9000.zip(r-4.4)coglasso_1.0.2.9000.zip(r-4.3)
coglasso_1.0.2.9000.tgz(r-4.4-x86_64)coglasso_1.0.2.9000.tgz(r-4.4-arm64)coglasso_1.0.2.9000.tgz(r-4.3-x86_64)coglasso_1.0.2.9000.tgz(r-4.3-arm64)
coglasso_1.0.2.9000.tar.gz(r-4.5-noble)coglasso_1.0.2.9000.tar.gz(r-4.4-noble)
coglasso_1.0.2.9000.tgz(r-4.4-emscripten)coglasso_1.0.2.9000.tgz(r-4.3-emscripten)
coglasso.pdf |coglasso.html✨
coglasso/json (API)
NEWS
| # Install 'coglasso' in R: |
| install.packages('coglasso', repos = c('https://drquestion.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/drquestion/coglasso/issues
- multi_omics_sd - Multi-omics dataset of sleep deprivation in mouse
- multi_omics_sd_micro - Multi-omics dataset of sleep deprivation in mouse
- multi_omics_sd_small - Multi-omics dataset of sleep deprivation in mouse
Last updated 1 months agofrom:6c8ff6e65e. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 08 2024 |
| R-4.5-win-x86_64 | OK | Sep 08 2024 |
| R-4.5-linux-x86_64 | OK | Sep 08 2024 |
| R-4.4-win-x86_64 | OK | Sep 08 2024 |
| R-4.4-mac-x86_64 | OK | Sep 08 2024 |
| R-4.4-mac-aarch64 | OK | Sep 08 2024 |
| R-4.3-win-x86_64 | OK | Sep 08 2024 |
| R-4.3-mac-x86_64 | OK | Sep 08 2024 |
| R-4.3-mac-aarch64 | OK | Sep 08 2024 |
Exports:bscoglassoget_networkselect_coglassostars_coglassoxestarsxstars
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigRcppRcppEigenrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Build multiple networks and select the best one from a multi-omics data set | bs |
| Estimate networks from a multi-omics data set | coglasso |
| Extract a 'coglasso' network | get_network |
| Multi-omics dataset of sleep deprivation in mouse | multi_omics_sd multi_omics_sd_micro multi_omics_sd_small |
| Plot selected 'coglasso' networks | plot.coglasso plot.select_coglasso |
| Select the best 'coglasso' network | select_coglasso |
| Efficient stability selection of the best 'coglasso' network | xestars |
| Stability selection of the best 'coglasso' network | xstars |
